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OpenTrust Consulting Inc.

This is a Contract position in Toronto, ON posted September 11, 2017.

You will handle all aspects of data analysis, from assay selection and evaluation, creating robust, validated protocols for analysis, meeting specific project needs, and final reporting to clinicians and collaborators. As part of GSI, you will be able to leverage the experience of the team and the institute to craft pipelines that are ready for rapid uptake by clinical laboratories.

Your responsibilities will include:

Performing analysis on next-generation sequencing (NGS) data: transforming data from sequence to information meaningful for biologists and clinicians; Ensuring that the NGS pipeline is consistently, reliably, efficiently and correctly processing data by interacting with the GSI production team; Ensuring that data is managed efficiently, securely, and without loss or corruption through its lifecycle; Researching, planning, implementing, and testing bioinformatics software tools that meet the analysis needs for specific collaborative projects; Supporting data deposition to external repositories to meet release cycles and publication requirements; Interacting with collaborative research groups to explain NGS capabilities and limitations, advising on experimental design, and presenting findings, tools, and techniques; Working with 3rd party software vendors to characterize and resolve problems with production software systems; Documenting and communicating pipeline processes and building the team knowledge base.

Required Qualifications:

Master’s degree in related discipline Minimum of 4 years of professional experience in bioinformatics or computational biology or related discipline; Minimum 4 years of experience with Python; Minimum 2 years of experience with Java for software development; Minimum 2 years of experience with R statistical and graphical software packages and associated bioinformatics libraries. Excellent communications and interpersonal skills; Experience in a multidisciplinary team environments; Minimum 2 years of experience with the Illumina sequencing platforms. Experience with Microarray platforms

Skills Required

  • Education level: None
  • Work experience (years): None


Salary: N/D

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